Input and Output

SeqAn supports many standard file formats for sequence analysis and additional provides directives to write new I/O modules. Among the sequence file formats are:

• FASTA/FASTQ,
• indexed FASTA,
• BLAST,
• SAM/BAM
• VCF
• BED
• GFF and GTF

Especially in BAM I/O SeqAn is among the fastest implementations around. Try it out!