Update [15.04.2016]: Here you can download the power point slides from the meeting.

We are happy to announce the 2016 SeqAn user meeting supported by the CIBI (Center for integrative Bioinformatics), a member of  of the de.NBIThe meeting will take place at FU Berlin from March 30th to April 1st 2016.

The SeqAn user meeting addresses bioinformatics students and professionals who want to develop efficient applications for NGS analysis based on an efficient, well-maintained C++ library. In the meeting you will hear talks from groups who actively use SeqAn in their daily work, you will here about how some of the SeqAn apps work and how they were developed, and finally you get hands-on tutorials to get yo you started with developing your own SeqAn apps and include them into workflow systems such as KNIME.

Please sign up using this formThe deadline is March 14th 2016.

Below you can see a preliminary schedule.

Time\Date

Wednesday
30th

Thursday
31st

Friday April
1st

09:00-10:30

 Welcome and Introduction
(Knut Reinert)

 

App session 1:  Mason (Manuel Holtgrewe)

App session 2: Imseq (Leon Kuchenbecker)

Tutorial 1: Alignment representation
(Marcel Erhart)

Tutorial 2:  Alignment Algorithms

Tutorial 7: CLP

Tutorial 8: File I/O

10:30-11:00

Break

Break

Break

11:00-12:30

Invited talk 1: Whole-genome sequence analysis of 20,000 Icelanders
Birte Kehr (deCode)

Invited talk 2: IsomiR-SEA: A new powerful profiling tool reveals novel biological miRNAs and isomiRs features hidden in small RNA-Seq samples.
Gianvito Urgese (Turin)

 

App session 3: Lambda (Hannes Hauswedell)

App session 4: deCode BAM tools
(Birte Kehr)

Talk to Developers

Tutorial 3: tbd

Tutorial 4: tbd

Tutorial 9: tbd

Tutorial 10:tbd

12:30-14:00

Lunch

Lunch

Lunch

14:00-15:30

SeqAn technical talk
(Hannes Hauswedell)

Introduction to KNIME
(Oleg Yasnev, KNIME)

App session 5: iPec (You)

App session 6: KNIME and SeqAn

( Temesgen Dadi)

Tutorial 5: Index 1

Tutorial 6: Index 2

Tutorial 11:KNIME integration 1

Tutorial 12:KNIME integration 2

15:30-16:00

Break

Break

Break

16:00-18:00

Introduction tutorial

 

Social Event: Tapas Bar

 

Meeting