Publications

2011
12.	Manuel Holtgrewe, Anne-Katrin Emde, David Weese and Knut Reinert. A novel and well-defined benchmarking method for second generation read mapping. BMC Bioinformatics, 12(1):210, 2011.
11.	Tobias Rausch and Knut Reinert. Practical multiple sequence alignment, chapter in ''The problem solving handbook for computational biology and bioinformatics.''. Springer, 2011.
10.	Birte Kehr, David Weese and Knut Reinert. STELLAR: fast and exact local alignments. BMC Bioinformatics, 12(Suppl 9):S15, 2011.
2010
9.	Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert and Silke R. Sperling. MicroRazerS: rapid alignment of small RNA reads. Bioinformatics, 26(1):123-124, 2010.
2009
8.	Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring and Knut Reinert. A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. Bioinformatics, 25(9):1118-1124, 2009.
7.	David Weese, Anne-Katrin Emde, Tobias Rausch, Andreas Döring and Knut Reinert. RazerS - fast read mapping with sensitivity control. Genome Research, 19(9):1646-1654, 2009.
2008
6.	Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cedric Notredame and Knut Reinert. Segment-based multiple sequence alignment. Bioinformatics, 24(16):i187-192, 2008.
5.	Tobias Rausch, Anne-Katrin Emde and Knut Reinert. Robust consensus computation. BMC Bioinformatics, 9(Suppl 10):P4, 2008.
4.	Andreas Döring, David Weese, Tobias Rausch and Knut Reinert. SeqAn an efficient, generic C++ library for sequence analysis. BMC Bioinformatics, 9:11, 2008.
3.	David Weese and Marcel H. Schulz. Efficient String Mining under Constraints via the Deferred Frequency Index. In Petra Perner, editor, Proceedings of the 8th Industrial Conference on Data Mining (ICDM'08) , page 374-388. LNAI 5077 Publisher: Springer Verlag, 2008.
2.	Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert and Martin Vingron. Fast and Adaptive Variable Order Markov Chain Construction. Proceedings of the 8th International Workshop in Algorithms in Bioinformatics (WABI'08) , page 306-317. LNBI 5251 Publisher: Springer Verlag, 2008.
2006
1.	David Weese. Entwurf und Implementierung eines generischen Substring-Index. Humboldt University Berlin, 2006.

Export as: BibTeX