SeqAn::T-Coffee

Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cedric Notredame, Knut Reinert

About

SeqAn::T-Coffee is an open source multiple sequence alignment program. SeqAn::T-Coffee aligns amino acid, DNA and RNA sequences using a consistency-based progressive alignment algorithm on a graph of sequence segments.

Binaries and source Code for SeqAn::T-Coffee

The source code can be accessed via the SeqAn SVN.

• SeqAn::TCoffee (v1.0) - Release 1.0 of SeqAn::T-Coffee.

Usage

./seqan_tcoffee -s [Options]
./seqan_tcoffee --help

References

• Rausch, T., Emde, A.-K., Weese, D., Doring, A., Notredame, C., and Reinert, K. (2008). Segment-based multiple sequence alignment. Bioinformatics, 24(16), i187–192.