Jonathan Göke, Marcel H. Schulz, Julia Lasserre, Martin Vingron
ALF can be used to calculate the pairwise similarity of sequences using alignment-free methods. All methods which are implemented are based on k-mer counts. More details can be found in the online documentation of the alignment-free methods (www.seqan.de). By default, ALF uses the N2 similarity measure.
The code was successfully tested on Linux (32 and 64). Please take a look at the README file for usage instructions.
Releasing ALF using SeqAn’s new automatic build system.
First release of ALF Version 1.0
For questions, comments, or suggestions please contact Jonathan Göke.
Last Update 25. April 2013