Alignment Free Sequence Comparison

Efficient String Mining under Constraints via the Deferred Frequency Index

A Read Simulator

Rapid Alignment of Small RNA reads

Fast and Adaptive Variable Order Markov Chain Construction

Read Alignment BEnchMArk

This manual describes how to use Rabema 1.1 with simulated and real-world data for the evaluation of read mappers.

This page contains the documentation of the command line interface. You can generate this yourself by passing --export-help=html to the Rabema programs. Table Of Contents [---ATOC---][---TAG:h2---] rabema_build_gold_standard RABEMA Gold Standard...

Faster, fully sensitive read mapping

Fast Read Mapping with Sensitivity Control

Segment-Based Multiple Sequence Alignment

A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.

SNP and Indel Calling in Mapped Read Data

Split Read Mapping as an Extension of RazerS

The SwifT Exact LocaL AligneR