Alignment Free Sequence Comparison
Methods for the detection and assembly of inserted sequence in High-Throughput Sequencing Data.
Manuel Holtgrewe, Leon Kuchenbecker, and Knut Reinert
Motivation: Large insertions of novel sequence are an important type of structural variants....
Pairwise and hidden three-way breakpoint counts in genome alignments
Efficient String Mining under Constraints via the Deferred Frequency Index
A parallel and automatic strategy for read error
Generic mUlti-spliT Alignment Finder
INtersecting SEcond Generation sequencing daTa with annotation
Scalable data structure for analyzing thousands of similar genomes on your laptop
The Local Aligner for Massive Biological Data
Fast and sensitive read mapping with approximate seeds and multiple backtracking.
Rapid Alignment of Small RNA reads
Region of Interest Analysis for NGS Data
Fast and Adaptive Variable Order Markov Chain Construction
Faster, fully sensitive read mapping
Segment-Based Multiple Sequence Alignment
A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.
SNP and Indel Calling in Mapped Read Data
Split Read Mapping as an Extension of RazerS
The SwifT Exact LocaL AligneR
Last Update 31. January 2013