Projects

ALF

Alignment Free Sequence Comparison

ANISE and BASIL

Methods for the detection and assembly of inserted sequence in High-Throughput Sequencing Data. Manuel Holtgrewe, Leon Kuchenbecker, and Knut Reinert Abstract Motivation: Large insertions of novel sequence are an important type of structural variants....

Breakpoint Calculator

Pairwise and hidden three-way breakpoint counts in genome alignments

DFI

Efficient String Mining under Constraints via the Deferred Frequency Index

Fiona

A parallel and automatic strategy for read error correction

Gustaf

Generic mUlti-spliT Alignment Finder

INSEGT

INtersecting SEcond Generation sequencing daTa with annotation

JST

Scalable data structure for analyzing thousands of similar genomes on your laptop

Lambda

The Local Aligner for Massive Biological Data

Masai

Fast and sensitive read mapping with approximate seeds and multiple backtracking.

Mason

A Read Simulator

MicroRazerS

Rapid Alignment of Small RNA reads

NGS ROI

Region of Interest Analysis for NGS Data

PISAtoolbox

Fast and Adaptive Variable Order Markov Chain Construction

Rabema

Read Alignment BEnchMArk

RazerS 3

Faster, fully sensitive read mapping

SeqAn::T-Coffee

Segment-Based Multiple Sequence Alignment

SeqCons

A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.

SnpStore

SNP and Indel Calling in Mapped Read Data

SplazerS

Split Read Mapping as an Extension of RazerS

Stellar

The SwifT Exact LocaL AligneR

Yara - Yet another read aligner

Yet another read aligner
Last Update 31. January 2013